PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0116s0057.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 236aa    MW: 26814.2 Da    PI: 10.5593
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0116s0057.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.6e-14136225198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+  ++ps+v++  +l lp  f+++h  + ++++ +tl de+g ++        ++ +  l++GWk+F+ a +L +gD +vF+l++ + f
  Kalax.0116s0057.2.p 136 FVRPMLPSHVSSCFWLGLPSYFCKQHL-P-KRDTVMTLVDEKGDEYPTIW--LPRKTG--LSGGWKGFAVARELVDGDALVFQLISPTAF 219
                          778899*****************9995.3.36679************999..555544..************************987777 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v ++r
  Kalax.0116s0057.2.p 220 --KVYIVR 225
                          ..777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-18128225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-22130227IPR015300DNA-binding pseudobarrel domain
CDDcd100178.82E-26134225No hitNo description
SMARTSM010194.3E-21136227IPR003340B3 DNA binding domain
PROSITE profilePS5086311.406136227IPR003340B3 DNA binding domain
PfamPF023621.1E-12136225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTRPHTTRSS KMVMHSYEQC RQKRLEENKK RMEALNLPQL AKTLREISTP PRPTPAKRRP  60
YEKQLVAVRR SPRVANMPAG PVYVEVDVAV GRLSMPRRLS KPRAMLGAYA TNEAREWSIS  120
RPEELQSALD QAYPSFVRPM LPSHVSSCFW LGLPSYFCKQ HLPKRDTVMT LVDEKGDEYP  180
TIWLPRKTGL SGGWKGFAVA RELVDGDALV FQLISPTAFK VYIVRVEGFK EGTKQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220213.12e-86PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ46e-64Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A0D2QCC63e-86A0A0D2QCC6_G
STRINGGLYMA04G04030.16e-77(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-62B3 family protein